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	Copyright © 2011-2014 Sebastian Karcher

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	Zotero is free software: you can redistribute it and/or modify
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	the Free Software Foundation, either version 3 of the License, or
	(at your option) any later version.

	Zotero is distributed in the hope that it will be useful,
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				"title": "Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies",
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						"lastName": "Boisvert",
						"firstName": "Sébastien",
						"creatorType": "author"
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						"firstName": "François",
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					{
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						"firstName": "Jacques",
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				"date": "October 20, 2010",
				"DOI": "10.1089/cmb.2009.0238",
				"abstractNote": "An accurate genome sequence of a desired species is now a pre-requisite for genome research. An important step in obtaining a high-quality genome sequence is to correctly assemble short reads into longer sequences accurately representing contiguous genomic regions. Current sequencing technologies continue to offer increases in throughput, and corresponding reductions in cost and time. Unfortunately, the benefit of obtaining a large number of reads is complicated by sequencing errors, with different biases being observed with each platform. Although software are available to assemble reads for each individual system, no procedure has been proposed for high-quality simultaneous assembly based on reads from a mix of different technologies. In this paper, we describe a parallel short-read assembler, called Ray, which has been developed to assemble reads obtained from a combination of sequencing platforms. We compared its performance to other assemblers on simulated and real datasets. We used a combination of Roche/454 and Illumina reads to assemble three different genomes. We showed that mixing sequencing technologies systematically reduces the number of contigs and the number of errors. Because of its open nature, this new tool will hopefully serve as a basis to develop an assembler that can be of universal utilization (availability: http://deNovoAssembler.sf.Net/). For online Supplementary Material, see www.liebertonline.com.",
				"issue": "11",
				"journalAbbreviation": "Journal of Computational Biology",
				"libraryCatalog": "liebertpub.com (Atypon)",
				"pages": "1519-1533",
				"publicationTitle": "Journal of Computational Biology",
				"shortTitle": "Ray",
				"url": "https://www.liebertpub.com/doi/abs/10.1089/cmb.2009.0238",
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	},
	{
		"type": "web",
		"url": "http://journals.jps.jp/toc/jpsj/2014/83/6",
		"items": "multiple"
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	{
		"type": "web",
		"url": "http://www.worldscientific.com/doi/abs/10.1142/S0219749904000195",
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				"itemType": "journalArticle",
				"title": "Probabilities from envariance?",
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						"firstName": "Ulrich",
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				"DOI": "10.1142/S0219749904000195",
				"ISSN": "0219-7499",
				"abstractNote": "Zurek claims to have derived Born's rule noncircularly in the context of an ontological no-collapse interpretation of quantum states, without any \"deus ex machina imposition of the symptoms of classicality\". After a brief review of Zurek's derivation it is argued that this claim is exaggerated if not wholly unjustified. In order to demonstrate that Born's rule arises noncircularly from deterministically evolving quantum states, it is not sufficient to assume that quantum states are somehow associated with probabilities and then prove that these probabilities are given by Born's rule. One has to show how irreducible probabilities can arise in the context of an ontological no-collapse interpretation of quantum states. It is argued that the reason why all attempts to do this have so far failed is that quantum states are fundamentally algorithms for computing correlations between possible measurement outcomes, rather than evolving ontological states.",
				"issue": "02",
				"journalAbbreviation": "Int. J. Quantum Inform.",
				"libraryCatalog": "worldscientific.com (Atypon)",
				"pages": "221-229",
				"publicationTitle": "International Journal of Quantum Information",
				"url": "http://www.worldscientific.com/doi/abs/10.1142/S0219749904000195",
				"volume": "02",
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		"type": "web",
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		"items": [
			{
				"itemType": "journalArticle",
				"title": "Block Copolymer Thin Films: Physics and Applications",
				"creators": [
					{
						"lastName": "Fasolka",
						"firstName": "Michael J",
						"creatorType": "author"
					},
					{
						"lastName": "Mayes",
						"firstName": "Anne M",
						"creatorType": "author"
					}
				],
				"date": "August 1, 2001",
				"DOI": "10.1146/annurev.matsci.31.1.323",
				"ISSN": "1531-7331",
				"abstractNote": "A two-part review of research concerning block copolymer thin films is presented. The first section summarizes experimental and theoretical studies of the fundamental physics of these systems, concentrating upon the forces that govern film morphology. The role of film thickness and surface energetics on the morphology of compositionally symmetric, amorphous diblock copolymer films is emphasized, including considerations of boundary condition symmetry, so-called hybrid structures, and surface chemical expression. Discussions of compositionally asymmetric systems and emerging research areas, e.g., liquid-crystalline and A-B-C triblock systems, are also included. In the second section, technological applications of block copolymer films, e.g., as lithographic masks and photonic materials, are considered. Particular attention is paid to means by which microphase domain order and orientation can be controlled, including exploitation of thickness and surface effects, the application of external fields, and the use of patterned substrates.",
				"issue": "1",
				"journalAbbreviation": "Annu. Rev. Mater. Res.",
				"libraryCatalog": "annualreviews.org (Atypon)",
				"pages": "323-355",
				"publicationTitle": "Annual Review of Materials Research",
				"shortTitle": "Block Copolymer Thin Films",
				"url": "http://www.annualreviews.org/doi/abs/10.1146/annurev.matsci.31.1.323",
				"volume": "31",
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	{
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				"title": "Observations of Ice Microphysics through the Melting Layer",
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						"lastName": "Heymsfield",
						"firstName": "Andrew J.",
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					{
						"lastName": "Bansemer",
						"firstName": "Aaron",
						"creatorType": "author"
					},
					{
						"lastName": "Poellot",
						"firstName": "Michael R.",
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					},
					{
						"lastName": "Wood",
						"firstName": "Norm",
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					}
				],
				"date": "April 30, 2015",
				"DOI": "10.1175/JAS-D-14-0363.1",
				"ISSN": "0022-4928",
				"abstractNote": "The detailed microphysical processes and properties within the melting layer (ML)—the continued growth of the aggregates by the collection of the small particles, the breakup of these aggregates, the effects of relative humidity on particle melting—are largely unresolved. This study focuses on addressing these questions for in-cloud heights from just above to just below the ML. Observations from four field programs employing in situ measurements from above to below the ML are used to characterize the microphysics through this region. With increasing temperatures from about −4° to +1°C, and for saturated conditions, slope and intercept parameters of exponential fits to the particle size distributions (PSD) fitted to the data continue to decrease downward, the maximum particle size (largest particle sampled for each 5-s PSD) increases, and melting proceeds from the smallest to the largest particles. With increasing temperature from about −4° to +2°C for highly subsaturated conditions, the PSD slope and intercept continue to decrease downward, the maximum particle size increases, and there is relatively little melting, but all particles experience sublimation.",
				"issue": "8",
				"journalAbbreviation": "J. Atmos. Sci.",
				"libraryCatalog": "journals.ametsoc.org (Atypon)",
				"pages": "2902-2928",
				"publicationTitle": "Journal of the Atmospheric Sciences",
				"url": "http://journals.ametsoc.org/doi/abs/10.1175/JAS-D-14-0363.1",
				"volume": "72",
				"attachments": [
					{
						"title": "Full Text PDF",
						"mimeType": "application/pdf"
					},
					{
						"title": "Snapshot",
						"mimeType": "text/html"
					}
				],
				"tags": [],
				"notes": [],
				"seeAlso": []
			}
		]
	},
	{
		"type": "web",
		"url": "http://trrjournalonline.trb.org/doi/10.3141/2503-12",
		"items": [
			{
				"itemType": "journalArticle",
				"title": "Development of the Worldwide Harmonized Test Procedure for Light-Duty Vehicles",
				"creators": [
					{
						"lastName": "Ciuffo",
						"firstName": "Biagio",
						"creatorType": "author"
					},
					{
						"lastName": "Marotta",
						"firstName": "Alessandro",
						"creatorType": "author"
					},
					{
						"lastName": "Tutuianu",
						"firstName": "Monica",
						"creatorType": "author"
					},
					{
						"lastName": "Anagnostopoulos",
						"firstName": "Konstantinos",
						"creatorType": "author"
					},
					{
						"lastName": "Fontaras",
						"firstName": "Georgios",
						"creatorType": "author"
					},
					{
						"lastName": "Pavlovic",
						"firstName": "Jelica",
						"creatorType": "author"
					},
					{
						"lastName": "Serra",
						"firstName": "Simone",
						"creatorType": "author"
					},
					{
						"lastName": "Tsiakmakis",
						"firstName": "Stefanos",
						"creatorType": "author"
					},
					{
						"lastName": "Zacharof",
						"firstName": "Nikiforos",
						"creatorType": "author"
					}
				],
				"date": "January 1, 2015",
				"DOI": "10.3141/2503-12",
				"ISSN": "0361-1981",
				"abstractNote": "To assess vehicle performance on criteria compounds, carbon dioxide emissions, and fuel energy consumption, laboratory tests are generally carried out. During these tests, a vehicle is driven on a chassis dynamometer (which simulates the resistances the vehicle encounters during its motion) to follow a predefined test cycle. In addition, all conditions for running a test must strictly adhere to a predefined test procedure. The procedure is necessary to ensure that all tests are carried out in a comparable way, following the requirements set by the relevant legislation. Test results are used to assess vehicle compliance with emissions limits or to evaluate the fuel consumption that will be communicated to customers. Every region in the world follows its own approach in carrying out these types of tests. The variations in approaches have resulted in a series of drawbacks for vehicle manufacturers and regulating authorities, leading to a plethora of different conditions and results. As a step toward the harmonization of the test procedures, the United Nations Economic Commission for Europe launched a project in 2009 for the development of a worldwide harmonized light-duty test procedure (WLTP), including a new test cycle. The objective of the study reported here was to provide a brief description of WLTP and outline the plausible pathway for its introduction in European legislation.",
				"journalAbbreviation": "Transportation Research Record: Journal of the Transportation Research Board",
				"libraryCatalog": "trrjournalonline.trb.org (Atypon)",
				"pages": "110-118",
				"publicationTitle": "Transportation Research Record: Journal of the Transportation Research Board",
				"url": "http://trrjournalonline.trb.org/doi/10.3141/2503-12",
				"volume": "2503",
				"attachments": [
					{
						"title": "Full Text PDF",
						"mimeType": "application/pdf"
					},
					{
						"title": "Snapshot",
						"mimeType": "text/html"
					}
				],
				"tags": [],
				"notes": [],
				"seeAlso": []
			}
		]
	}
]
/** END TEST CASES **/